Command referenceΒΆ
This section contains documentation for each command available in the pi2 system. The same information is also available using commands:
pi2 help
pi2 help(command_name)
where command_name is the name of the command whose help is to be retrieved.
If using pi2 from ipython, the help is available using the standard TAB and ?-help functionality.
Available commands:
- abs
- add
- analyzelabels
- analyzeparticles
- arg
- autothreshold
- autothresholdvalue
- axelssoncolor
- bandpassfilter
- bilateralfilter
- bilateralfilterapprox
- bin
- blockmatch
- blockmatchmemsave
- box
- canny
- capsule
- ceil
- chunksize
- classifyskeleton
- cleanmaxima
- cleanskeleton
- clear
- clearmeta
- closingfilter
- conjugate
- convert
- copy
- copymeta
- cos
- createfbpfilter
- crop
- csa
- csaheaders
- curvature
- cylinderorientation
- cylindricality
- danielsson2
- deadpixelremoval
- defaultrecsettings
- delaying
- derivative
- distribute
- divide
- dmap
- dmap2
- doublethreshold
- drawellipsoids
- drawgraph
- drawheightmap
- drawspheres2
- dualthreshold
- echo
- ellipsoid
- ensuresize
- eval
- exponentiate
- fbp
- fbppreprocess
- fft
- fileinfo
- fillparticles
- fillskeleton
- finalizetmap
- findsurface
- flip
- floodfill
- floor
- frangifilter
- gaussfilter
- generictransform
- get
- getmapfile
- getmeta
- getpointsandlines
- gradient
- gradientmagnitude
- greedycoloring
- grow
- growlabels
- headers
- hello
- help
- highpassfilter
- hist
- hist2
- ifft
- imag
- info
- inpaintg
- inpaintn
- inv
- invsubtract
- isimagefile
- label
- labelmaxima
- license
- line
- lineskeleton
- linethin
- linmap
- list
- listanalyzers
- listmeta
- localmaxima
- localthreshold
- log
- log10
- mainorientationcolor
- mapraw
- maskedbin
- maskedmean
- max
- maxfilter
- maxjobs
- maxmemory
- maxproject
- maxval
- mean
- meancurvature
- meanproject
- medianfilter
- metacolumncount
- metarowcount
- min
- minfilter
- minproject
- minval
- montage
- morphorec
- multiply
- negate
- newimage
- newlike
- newlikefile
- newvalue
- noise
- normalize
- normalizez
- normsquared
- openingfilter
- orientationdifference
- pathlength
- plateorientation
- pointstodeformed
- polysdmap
- printscripts
- pruneskeleton
- pullback
- ramp
- ramp3
- rawinfo
- read
- readblock
- readmeta
- readnn5block
- readraw
- readrawblock
- readsequence
- readsequenceblock
- readvol
- real
- regionremoval
- removeedges
- replace
- resettiming
- reslice
- rot90ccw
- rot90cw
- rotate
- round
- rounddistanceridge2
- satofilter
- savetiming
- scale
- scalelabels
- sdmap
- sequenceinfo
- set
- setafterheightmap
- setbeforeheightmap
- setedges
- setmeta
- shiftz
- sin
- sphere
- square
- squareroot
- squaresum
- stddev
- stddevfilter
- submitjob
- subtract
- sum
- sumproject
- surfacearea
- surfaceskeleton
- surfacethin
- swapbyteorder
- tan
- threshold
- thresholdperiodic
- thresholdrange
- timing
- tmap
- tracelineskeleton
- translate
- variancefilter
- vawefilter
- waitforjobs
- waitreturn
- whist
- whist2
- writelz4
- writemeta
- writenn5
- writenn5block
- writenrrd
- writepng
- writeraw
- writerawblock
- writesequence
- writesequenceblock
- writetif
- writevtk